Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1001325 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1001325 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19170
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (96.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19170

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (96.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001715	Metagenome / Metatranscriptome	647	Y
F006894	Metagenome / Metatranscriptome	362	Y
F019309	Metagenome / Metatranscriptome	230	Y
F078640	Metagenome	116	Y
F085621	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100132510	F001715	GGA	MPDMLEPIIPHIEENIPLPKNAVDAFPELSPAEELTMRANVVKLMSDLTGKPLIPTQENADQAKEIAREMIANPGSRPDFAKYPNETLAMLAGMVAQMNVSIVDELSDLKLYVVNKLVMEVENAKDAKTRVSALSKLGEIDGVDAFKKRSEVTHKILSIEEVEKELLDTLGSLENKVIDVEAREIVRNESKSDA
Ga0209296_100132516	F085621	AGGAG	MGRMKDLLIDIDDEELQVLLDNFKPTSEELQAELNEQQAHEVSLPSVSVKPEIKVYLLMKNGYPVRSYMDRALSFYECWVCTKGEEYAETPDDYYVVEMMHDTSTYTGE
Ga0209296_100132517	F006894	GGA	MNDFFWNYRIVNTKSANNGEDWYCLQEVVYSVDGKPESFGAPCLGSEDMESFGDVWHMMQEAMTLPPLQEEDFV
Ga0209296_100132520	F078640	AGGA	MTQDDMSHMEAVFLPIDRDRPSLPYDEFIVDGGRHPVSEALERKVGGHFFAHYEFPNGKTASVICGQLFYSRIEAPYEVRIGGEEQPHGYQTDEEMMILLAKAIGDQ
Ga0209296_10013255	F019309	N/A	MSYEMKQALEYTAKQIDEKVKQLEENLGARAARSYDEYCGMCGEITGLLTARRYITDLTKNMENSDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1001325

Overview

Ecosystem & Geography

Associated Families

Sequences