Scaffold Ga0209296_1001297

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001297
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19392
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009072	Metagenome / Metatranscriptome	323	Y
F023097	Metagenome / Metatranscriptome	211	Y
F033401	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100129715	F023097	GAG	MKTWCVKDHLTGQIFKVLFSEQEFQEFLKKNPDIDECIDCIECEDAPSITLE
Ga0209296_100129727	F009072	N/A	MNKYNTEDYFSVIETRTGRKILDCGEESDALAMVAFNPANRSILRNKFLMGQVIDIVMPKALPTNEIAINTKPYQDHQDEWMVEKINQLPQIKLPEGQQKPFRV
Ga0209296_100129732	F033401	GGA	MSNFMDLHNLVTTECERRGLELIHLPEKLVRRSTDVIVSCPCTGQRNMSIRNFIFTYEKGGEAFCCKRKSKVGKNNPAFGKPTWNAGTVGVSKSYGFFGFKEEWADREDYLYFIETIYGTYKIGRSFHGIKYRFTETVKELGEWKASHKEVFDCERYILATYKHHQNKIGGIIGGSEHFTKELPIEEIIEYATQNLSVSRNLY