Scaffold Ga0209296_1001285

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001285
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19522
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000852	Metagenome / Metatranscriptome	860	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007644	Metagenome / Metatranscriptome	347	Y
F008132	Metagenome / Metatranscriptome	338	Y
F013527	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100128512	F000852	GGA	MTTKREYLKQQGITVGARGRFSGAAKTALAEAEKSGIKFEAETKSNKAN
Ga0209296_100128513	F000441	AGGAG	MTNEYINDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDREGLIQNS
Ga0209296_100128515	F000263	AGG	MNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGIREENRKDGHL
Ga0209296_100128516	F007644	AGAAGG	MTRSSSFIEYMKLHLLSLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMESTNERYE
Ga0209296_100128520	F000450	GGCGG	MGDRANFVFVDSKGDSIVLYGHWAGHNMLANLADAVAKARSRWTDTTYATRIAISQLVGDQWNMETGWGLSVNSISDNEHRIPVIDFNQQTFSLHEEDDWANTQNKVRGMKNEAIFTQDLSTFCEKYSDQLVSV
Ga0209296_100128524	F003422	N/A	MDKELISSKYTFICDPNECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIQPTETKEEQMETTVSPAVEYNPDLLVTYKIVSNYSDPEYATDKVRNIEWELHNARTNSKAVSAIQNRIGLVKDIITEAYSDSDDQETLRSIAEALDIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQNGNIEITDTEVCNVREN
Ga0209296_100128532	F003663	GGA	MLSTALEILEATKASVFDDEIMGLAGELHTRRNELPDEMHAKFLFMYSSALASKVADLVTKVLLSETEMSALIDTITELDDLTETILEENN
Ga0209296_100128536	F013527	AGG	MNIYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESVEV
Ga0209296_100128537	F004840	AGGAG	MYKLTCAYDGNAPHWTVEYENEYGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYRAGRKVVIK
Ga0209296_100128542	F008132	AGG	MTKWDTIQADVADAYIHLDEVEDVEQEDEQDFFGFSKAIQLDHLTDEELDEVFNMFGDK