Scaffold Ga0209296_1001126

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001126
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21281
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (23.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F009147	Metagenome / Metatranscriptome	322	N
F009603	Metagenome / Metatranscriptome	315	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100112610	F009147	N/A	MAVQADISTEYSMGREGFALVTSTAAQTGAWSGLIPVEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS
Ga0209296_100112614	F001272	N/A	MEITVKLTQEQANGLLQLIDVAVKAGGIQNAKVALPLVDLIVNAAQPKSE
Ga0209296_100112617	F017997	N/A	VNFIEQIVTALLKWLTGFVQTPPTIEDAKRDPDLKKKLLDRIADSNR
Ga0209296_100112619	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNGDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIVSAKRDGSGAYYALELGSKTK
Ga0209296_10011262	F050365	N/A	MTQTEYVKHSGLTKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMAAIHQQEAVFNEAAQSITEGPYRPPEASVAVNASLVTLDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVTVHASAAKNLINARQDVIALAEKERTMVSGSWVKKVMQDHDGAVAQLLKSMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHLTDPWK
Ga0209296_100112620	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSQVRMNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0209296_100112621	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADQDLEDQMPSFPRIVVRASTAVPVHPIERTCEVDITATLQLSADDTAEYQVLATVQIFENLLQYLYVDGNIAELNALDTNPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI
Ga0209296_10011264	F028809	AGG	MEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPFKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGAKDRMALIDMTTAMQYKMNQLF
Ga0209296_10011266	F009603	N/A	MESGNVVRSTSSSDVSVEFAEPGKGTAAPIEMLEMWESLLTDYDYAVTLLAGDGIASPTDLQIYNKMLTAVLVSTTRYYGDFTQFRREATTRMS
Ga0209296_10011269	F005633	N/A	MRIATTVAVDKTGKTKLVSGPDVSAELQRTNFNTANVPEGGKLILWIQGSLTPKIRKG