Scaffold Ga0209296_1000919

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000919
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24208
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F027776	Metagenome	193	Y
F056414	Metagenome	137	Y
F078415	Metagenome	116	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100091920	F078415	N/A	VRWLVPIVLLSFVYGATIKRECSISDFVNIAYSTHDTKERHDRIVEWLDDSGQVCTKEQLATIYNNLAQAVGTADTIAIRTKIEKLYERAK
Ga0209296_100091926	F017969	AGGAG	MIHILYIPVLFVCMNGNCEFMQAQTSYKSEQQCRAAIDAQKENLQKMALKGGQMVTLIEGTCITLKGGML
Ga0209296_100091927	F079788	AGGAG	MDTDDEIESWASIVLGLIATVFFFIGVVAVIVSACMAWGYYTYQPMCGTVASLFTQECKL
Ga0209296_100091928	F027776	GGTGG	MMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAETAQKRLDQELETLRQELKSIQTELAYAKAN
Ga0209296_100091929	F056414	GAGG	MKLTEYQRSQLKAAACFGCSQIDKVAASLQRENPAAFWRESELHQRNFYHEPKSYGSPVPHRSYVQRLVVRRRELDNERDQVMAQNHYLQQTFQLGVAA