Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000841 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000841 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25516
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (79.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25516

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (79.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F027488	Metagenome	194	N
F036203	Metagenome	170	Y
F096619	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100084117	F006261	GAGG	MATISSGYTTTVPIQITNPESWSFTAPENPTIKVVGINVLQPLNLNVVESYGVFKPLGASKTVVVSQSIYGIDGNYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVERNWTESGNINSLVRRIKVTYYEVGAP
Ga0209296_100084127	F036203	GAG	MAETRQPMSSSDAGNVTGSSSKAQRAHGVSDAQGVNPKINQDDFFKDLDSLVGFGREQAGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSSDVLRRHRRRLIGKDGCKCPNEH
Ga0209296_100084130	F008607	AGG	MDAIYNKVAEFMTDTVVFTPKSSVDKYNKTTFGASNTNVSVTGRLIYDTTKSKDVQGIEVIDIGRFITKGPATSITVAHRMVVGADTFTINAVDNIADENGAHHTVIRFGR
Ga0209296_100084143	F096619	N/A	MAINHAIVSVGTSATLLTVAASGGGKDGSTILVQNPSGGVSVYLGGAGVTSSSYGYILAAGSNISIELNQDEALYGAVASSTQSVAVLRQGV
Ga0209296_10008418	F027488	GGAGG	VSIRWITKVWADSPYDGTRLLIHLALADISHDDGRFFASQSNLSTKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLLWKKLPNSVGEEQSLGDVELPNSDTPNSPTLGLQLPNATPYHPSYTSVLSTTKSDETAVAVIPLSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRNYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000841

Overview

Ecosystem & Geography

Associated Families

Sequences