Scaffold Ga0209296_1000804

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000804
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26429
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003522	Metagenome	481	Y
F009394	Metagenome / Metatranscriptome	318	Y
F081079	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100080413	F081079	AGGA	VDIAEFLRQLTEQQNTQPNATSIGNENLNLNAYTRPTLGGNVNAYQETPVGLLSGTIGKEGTNPIYKDVALTNENFRGGILSQPGDVAPYGEYRDGNVMARVMGGDYPNASANYTTPLAGGQFTGGANYNNQGLGLNAEYAKVLNDWMLKARLNANPQEQQLLFGLGRGF
Ga0209296_100080418	F002037	AGG	MSKIYWIFIVVLAALAIWGTEQVMAQTTTILAPDGSVTVCQVSGGVIICV
Ga0209296_100080438	F003522	AGGA	VNTRDKILAYLTEPKAIKEIAAHVDGNYNTIKNLLVTMKMEGHIHAFKDKDNRLMHYYIPQPHPLQGIFGHTANFTEDQIKGVISHNADDAKHNLQQRTTQETFGQSVAYTLTQYD
Ga0209296_10008048	F009394	GAGG	MVKTDVESRLSTHEEVCAIRYEQINARLKRLEQILLGTAGFVIVYLLTNGMK