Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000793 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000793 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26620
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (65.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26620

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (65.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029757	Metagenome	187	N
F038679	Metagenome	165	Y
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F077219	Metagenome	117	N
F078720	Metagenome / Metatranscriptome	116	Y
F093882	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100079313	F078720	N/A	MDNKKIVAGVAGIAVVGILSYFGYRLVKEFNELDIDFFGENIEDSYHQRYPTKNGNE
Ga0209296_100079318	F093882	GGAG	MTNSDYLTMAENRFASVQRYFPNSSEFNRLFNIILDMTNKMTDEERNQHNAKKIETPEQKLAHLKEEQRVLDQMSMNKDSNSI
Ga0209296_100079344	F054874	GGAG	MPNEAKGGTFAPADMDLLKRALRYYKDMLVSTEESERASSPELMQVANLLHRIGRIA
Ga0209296_100079346	F047683	AGGA	MTLTVEQIETTFAAPAEGLADSYYPVLAYWIPIEKLEEVRAAYRATDTTIRIRYRGPRTVSVGREMSRPDKTTYTRSYHRAMQDCLIADATHFTVYDYTAR
Ga0209296_100079347	F029757	AGGA	MLTLSDINVLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQIEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEGEFDFYGLEILEYRFELKFGSISRWLSE
Ga0209296_100079363	F077219	N/A	MTELLEKLKTVFSVTEPGLVIDKDFLQLREDMKARLNQGTRNDFKFTKDVDCLVLEEWLIKKNIVLGPRPEHCEKSGACVYDVRVDDAYIDFKCIDENLYYNVSEQKLQTHPWVQEGIDAGRLTHYCFYRMHRPEDRPLRENDVVTFELINVLNSQYVVDSLMPSKFDGKFYKVPKYV
Ga0209296_10007939	F038679	GGCGG	MTNFLETIKWIGTVCVIIAAACRAFEFHEADLLISIVGASLWGYASIVMKDKALFVVNAFIVGILIVGVIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000793

Overview

Ecosystem & Geography

Associated Families

Sequences