NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000771

Scaffold Ga0209296_1000771


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000771 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26971
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (86.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013753Metagenome / Metatranscriptome268Y
F040004Metagenome / Metatranscriptome162N
F041650Metagenome159N
F072123Metagenome / Metatranscriptome121N
F091376Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100077110F041650AGGAMREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDSIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQEKVKELL
Ga0209296_100077115F013753GAGMANNEEMTLTVPQQNYLDWLCTAPSERVPASKAKYALEHTIDETTLRRWQKKEVFLNEWKKRVDDIQGSPERTQKLLDTLYDKALEGDTKSAQLYLQATNRMLPPTVTLQSTKKTNELTDRELDELIGQIAAHEKSRRGLKVV
Ga0209296_100077139F040004GAGGMKESRWDIPATGKYNFKTDLAFGKKGEDQVKRFLQGIVNGSFEVKSDRYRNGKMVVEVAQNPRQHGWKDSGLMVTEAQWWVYVYTMNQAMIVISTDRLKRYISSLPKSRIRLFAEGSNNPARGYLLLPEEVMPLLYDSAHDGNVEE
Ga0209296_10007715F072123GAGMLNITCTGCSTAFYAPELPRRGAICFKCHISTVNLGFTYGKTDFHGPTIKERQDKQLADAKSAGINAEPVTNWI
Ga0209296_10007719F091376AGGAMKYAQWTICRPEGSTPEPLIRSRGGQASGGFMKDAETVVGYVWSDCDLTGLDKWNFETMTHLEAMAIAQDLNPECFFGDDGTIQAPQVAV
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