NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000741

Scaffold Ga0209296_1000741


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000741 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27721
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021536Metagenome / Metatranscriptome218Y
F032655Metagenome / Metatranscriptome179N
F048941Metagenome147Y
F082678Metagenome / Metatranscriptome113N
F104500Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100074112F021536N/AMIFIEVDEAYAFDYLSILQVKKQKSSSAIETWSRCYLNLQTQFDSEKWFLMINSEEYENMIKANLLTFDAVDKAKNNEVTAQHVDYCNYQRHTAKQNFQKKFFNNNLCELKIGYDKYESSTL
Ga0209296_100074120F082678N/AMKDFNNNELATLRIALMDKIDKMDEIVKNCEKTNDITSQLYWQEAIVRNNELLNKLYDMQ
Ga0209296_100074126F032655N/AMENEVTILKTEKILGLFVVTYRLEGENFNRVSNRRTMEEITKAIQELINNKNGIRVVNNIIPSVKYSNSGRYFVNNRGVSVEE
Ga0209296_100074127F048941N/AMSMRGDVIRSVLDKAVRYYMPPSDIAELINDIFANLEWSEDLDITIQDLIECVKFYATDKHSSCDKDAYNKWLELHDSW
Ga0209296_100074130F104500N/AMTTKEITVADIIKFFQSVPPETKIRVKEEVQRNWETFTKYTNVVQYGNGEFNIECVDGISYCKEKNIIDFGI
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