Scaffold Ga0209296_1000667

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000667
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29163
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (56.67%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007919	Metagenome / Metatranscriptome	342	Y
F010764	Metagenome / Metatranscriptome	299	Y
F012341	Metagenome / Metatranscriptome	281	Y
F013631	Metagenome / Metatranscriptome	269	Y
F032252	Metagenome / Metatranscriptome	180	Y
F035276	Metagenome / Metatranscriptome	172	Y
F035757	Metagenome / Metatranscriptome	171	Y
F037191	Metagenome / Metatranscriptome	168	Y
F063622	Metagenome / Metatranscriptome	129	Y
F085383	Metagenome / Metatranscriptome	111	N
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100066722	F093764	N/A	MARRCKSVSRQMIESLQETLVEYFRDNIFDDCDYKGMTGSELFEALVETFKELESDLQEQLKPIQYVLDKLDPEDTDGVVTTV
Ga0209296_100066736	F085383	AGGTGG	MIETEKLYKICILDLLIAIDEDVVDWRNYPKLWTAIQKADIALDIWAGMNLKQIKQELEG
Ga0209296_100066738	F012341	N/A	MNITMKQFFDMVAKTIAEPHSQICEHDKRRAIRVFLYLDEFMMENVPEYCDDTSELGEIDFGAYAAGVLDELEGKK
Ga0209296_100066740	F035757	GAGG	MNKYGVVLSSLVDGATVSIQILVESEMSASQLTTYYKCKSITISDVYVEQLND
Ga0209296_100066757	F032252	N/A	MTIFRYKKDGNLYKLYEQKMPHYELQAVPYFPNQGILAKSKRSISMNDFEVVAER
Ga0209296_100066758	F063622	GAGG	MKLHERLTEWYYTHDAVQSGDVIANEIVDVVKDWLKNYHKEDNNKYDFDYFSGWSDCIEKLEKDAR
Ga0209296_100066763	F007919	GAG	MTNKLKFTQVSRVICPKTGIHYLDSVDEYGNHWTAQQETGVERWITYKQLWEQDPQQPWD
Ga0209296_100066765	F037191	AGGAGG	MTVAEWIEKLKEFPQDKEVKLTDGHKYHFYEGDFYFQLFEDVDGSIFVDIGIGGFEVKE
Ga0209296_10006677	F013631	N/A	MITDVFHYTTSRWDWQSGDVNQMWIQEIEESPDCYSYVAVAYNPRKDTSMVMSNPRGYFDTLHWVRKFCGSFSILP
Ga0209296_100066777	F010764	AGG	MIKISKTYHLALTEDQAKELYQLLKTEKDSGHLTVDHELILVHHELKNLFDSGIR
Ga0209296_100066779	F035276	N/A	MMSKSYISCYNNETKELEHFEVSYSIFVYIRQLEDEIKYASGDVKKLYPFRFGDEK