Scaffold Ga0209296_1000640

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000640
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29817
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.52%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F048306	Metagenome	148	N
F076073	Metagenome	118	Y
F077278	Metagenome	117	Y
F085162	Metagenome	111	Y
F085693	Metagenome	111	N
F090373	Metagenome / Metatranscriptome	108	Y
F092035	Metagenome	107	N
F092036	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100064011	F085162	N/A	MLKKLKQIWHEIIERWFLLTFYGERMERERLQVLAELVKRKDTLWKNLPIKPRTIQEILTYKEPKKKSIKELVDEYEKRSPVIQDALYEALKNIQQKEKENGNDKKETN
Ga0209296_100064014	F076073	AGG	MATVIELTEKIEDLFIKIPDKRKKIEYAEWRDTINKVIQDCNKLCKFKMYDIIKK
Ga0209296_10006402	F031482	N/A	MRNRYEKSPLSLIDGGSKIRITFKNGVRRIYHNIKDVSAYTAKVISESERDIDRIELEKEVVTTTKEWRALFGRGNYYGVLSNKSYDAEI
Ga0209296_100064026	F085693	N/A	MNTLQTTLTALQSQLESQKEASKYYYDNVFAKEIATLEASIVEWFYKFTGETYTIKIQSGGEQLQIFSSEEDVKDMWHHNAITIYYYSRYNEAAKAKLSFYSKEVEYDDTKTIAYLKTLGMVSVLMPQINFMMPTWKAEYQQYAQKRYATFEQPISHTEFAIRKTEAEILEEGLASYKQAGFTHTISSSTVCERQYNIPYDQEGAYTLETKPQYFDLQTGRGRYDHVRVYAFEVVGHIKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIATVYNWENFDRAKYNEKQTQRYLDHMSKFTTVVEVA
Ga0209296_100064028	F077278	N/A	MTILQATVDSASVGSAFMQYGILGVLAFLLGYFAWQQYLRLVKKNDQLEEKIDKLQEQMLKILVEERDRLDTLIRDNTAALQELQKTIYKYMVKSKE
Ga0209296_100064039	F090373	N/A	MLHEYTKAELNSMETIEQAWDGDELKIETDTHKIWLVLRENRQYNGDYVVETNVNGRWEQASYYFNY
Ga0209296_100064043	F092035	N/A	MADNFKEVQTAVDNMLNVKSYVRRKKKTQSDKKKEMFVQMINSLDEIFVRQGLMYADMDMDMFKYDEKFLAVIDVMLYFHFGEACSDVIAFYLYDRQNPDGTLNPILDENDTEIILENPYDLWNLLVMINPKIQD
Ga0209296_100064044	F092036	N/A	MGKNRPPRAIFENIGTLTAQDIEASNILKGLLKVEVPKAIEYAIENKKTFASIFEINDSNSYIELHKNQWIFALETCILFYVEEEDYEACNKMTKLIESIRSKKVNKIVTHTDKTN
Ga0209296_10006409	F048306	N/A	MTKEEAEFINKMCESNSITWTKLHIEYQKKFVDPSLWYQCSSGHQKDMSLPHGNQIDGSELCKEAQKIINKI