Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1000579 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31773 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (78.85%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F032163 | Metagenome / Metatranscriptome | 180 | Y |
F070899 | Metagenome / Metatranscriptome | 122 | Y |
F099186 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100057921 | F070899 | AGGA | MSNDPGLFTDATGEGMAGAMDVELETQREMPTVYNGSTSCKGCGMMLNPVQSLHTELCSSCNRRKLNKLVKGRMA |
Ga0209296_100057923 | F099186 | GGA | MANGANLYSGGVYGHKPWDKDRAGVITPEEAAFPPQAYIGPFASNQERLLSQSLAAFTMSAAEIQEYVRPPLPQIKLFPARYGFTENEIGIEDIIDLPRTAPTAQRVESDFSNTPNSTQSSSRNTLGGAV |
Ga0209296_100057941 | F032163 | GGA | MSDEIDKLFEDLDSYYPNSKRKRKPLVEKAPEVKLDLHWDTKPYKKTLPNGNEVEMFTIGPLAAALGRPVITIRTWIKEGYLPASPYRLPAKKDSKGDDHQGRRLYSRAMVEAVIRLFDSAGLLNIKRIEWSAHRQLSNEIAEAWNNIRANETKPN |
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