Scaffold Ga0209296_1000528

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000528
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33519
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F003660	Metagenome / Metatranscriptome	474	Y
F010395	Metagenome / Metatranscriptome	304	N
F032960	Metagenome / Metatranscriptome	178	N
F035673	Metagenome / Metatranscriptome	171	Y
F038589	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10005281	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDEVYADLKAQMKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIA
Ga0209296_10005282	F038589	N/A	MNLLEQMNASEYKKLLEYKEQYPTLGEGLIKALTEKTVVIHLTFDECIYLCQALEFPWAGLFNQIFDTFKSKP
Ga0209296_100052827	F032960	N/A	MATTVLSGSPQAATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVAKVVETLIAPTKPSLTQTGFIDHAGYYSGYRLDFMEEYGNTPAVQTGTVTTVSGRVAFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYADGYGWLSIGQFNYGVEKAYIQYWSATGATFARQFDVLASSVSGSNVIRFGVGPMNLKALTSGQCLDGNPGDYLFQGNAGDFYDVYFGRGANYTIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209296_100052840	F035673	N/A	MVLRFALCEAEAVFVHDLLRVLAWGCLDPADLPMVLGPNPWPRLICHRNNYSGMDLQMTNDQFVVAQKHRKYWDQYLASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTVTIPLSNAPANPEQ
Ga0209296_100052849	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDEVYADLKAQMKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK
Ga0209296_100052852	F003660	N/A	MKHETQAKLKAALATGYILLTACLGIAFFGRFIFALITN
Ga0209296_10005286	F010395	N/A	MPEYHSLRPAKALTNALERLMIAVENADLEGNHALLLEYRKACELLGYDPAMAQWQGTKEVHLSSGPNVADPVTVSYFHALNPEE