Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000481 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000481 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34644
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (72.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

34644

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (72.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003150	Metagenome / Metatranscriptome	504	Y
F004362	Metagenome / Metatranscriptome	442	Y
F004641	Metagenome / Metatranscriptome	429	Y
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F079388	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100048113	F004362	N/A	MESRLKNWAWYVTWGVIGPQVETTCRSFEKNYVPELGNLYADPEPHYEPDHIDGDLIEQAIKGLPLQLRQVLKMRYVSHPYASLNQLAHNARTTPHKLETDLHNAKKRLQQELDKKAKSNYHQNLYKLQDQQND
Ga0209296_100048127	F063629	AGGAG	MNTVVNLPQNSSFDKLMTEFGTIKILCEKIGVKYVTAYAWKMRNGIPKKWHTAIIEASEGRLTENDLG
Ga0209296_100048133	F079388	GGAG	VINKKCLEAFNKLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMNELEDIDFIVQPDQKPMHDDE
Ga0209296_100048137	F057002	N/A	MRSALTFTKESQRPTDYAGKRFDQALHDKYDPPARKVVSEWMQMKWGLECRENPNVYGVDLIAYRAGNPVGFVEVEVRGWSFCHHTTIHIAHRKAKLFLQDRPVLFFALTHDLSHAYWLKAELVKKCPLIKVNNREVPSGEFFFDVPVSWFKYVNLTDPF
Ga0209296_100048140	F004641	N/A	MADENQKGAFIEKLLFALLPLLIGCTGYLISALGALQHDVTILNSKVSLVVTSDNKQASNTGAELAREKLRQDLGIEIQKNRDSIAENRLHIAIMEEKLGVVKKIQPLRMGEK
Ga0209296_100048142	F003150	AGG	VSDPFGITDGVKSVTSSINESVKASQELSKAIDGVLEVADKAAKERADSRKKARQVNPNTTTIIEAVDEFQQLLIARQSESKIQDQITKKYGSHAWDEIQGIKARKQWEDKQDRYLEQHDRRVMKSVMLLCYIFSAWIAYECTWGRWK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000481

Overview

Ecosystem & Geography

Associated Families

Sequences