Scaffold Ga0209296_1000466

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000466
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34982
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005738	Metagenome / Metatranscriptome	391	Y
F006740	Metagenome	365	Y
F048177	Metagenome	148	Y
F085598	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100046632	F085598	GGAGG	VRLNNWKTQLRAEKSINKIYQRDFNAAWRKLNKSMKTIKQLEDKIATHLATIKQGA
Ga0209296_100046637	F006740	AGGAG	MPAFNTWSQENLAKFAAEAYAKMQEQQNHIEQLQNDLKDAMNAYRSLIK
Ga0209296_10004664	F048177	AGG	VSEVVEAMQVVDNVFVKLHQFLRAGDTHQGHAHAFDHVTLLATGSVLMKHDKGEQEYKAPTLIVTPKGISHQFTAKEPNTVFCCIHAIRDGDGLDDVVLPEISQEKAWELLTKYELAVPTQS
Ga0209296_10004668	F005738	N/A	MSFGIAVRNAVSIGLGGIATLFSGTFDASLTVDNLLTESGENLVQENGDYILLE