Scaffold Ga0209296_1000435

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000435
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36011
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (81.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F056414	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100043525	F012212	AGG	VISLLASAESPWPNTETKTVLVCRIPKKDEDKKMGANEFTDKDGRICRWVVVNKK
Ga0209296_10004353	F044360	GAGG	MATKKLLETDVYPSDRFKVFEHSLMVEMEMAKMEHEKVWGIDRVIDLVDAEFRRKFNAQRERIWESSQARDEERLEKAIKGMIAAYKALTRWSTEAGIEQMPKIDCMEHRMQDGSLLVVVRDRTMATWYEQFRKAPGARSIWTLAEIELVMTGPTLTQVREIKALIPGAKMVPVTPQGSSGFEEMPNDIDISKPFKGGKMFDTKAAERARDERRT
Ga0209296_10004354	F052463	GGAGG	MPGNPKVRADIALLEDIDDELILSMFEEGRSKADICRGLGVGRRALDTWIADNDYEPIITRARVEAASHLACETLTIADGMDVDNGQRDVQRIRTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE
Ga0209296_100043545	F056414	AGGAG	MKLTDYQRSQLKAAACFGGDQIDKVAASLQRENPEAFLRDSELHQRNFFHEPMSYGFVIPHRSYVERFIPRRREQDNERDQVMAQNHYLQQTFQIGIGA
Ga0209296_100043553	F039985	AGGA	MLNLSNNNGSGNSYIRYAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGDNGGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNAEDGLEHWAEPEPAPAPVRKAKPAPAPVMDDEEFF