Scaffold Ga0209296_1000396

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000396
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37552
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F001827	Metagenome / Metatranscriptome	629	Y
F002097	Metagenome	593	Y
F015972	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100039611	F000346	AGGAG	MDKADLKQDKKMMAGAVHKHEKRLHPGKPMTKLAKGGVTSDAMKAVGRNLARVANQGSK
Ga0209296_10003963	F001827	AGGA	MNNDVKTMTDGAAVVVGLGGFMGWMTPVVTLVGGILTIVWLALRIYETETVKALIAKYAKHE
Ga0209296_100039632	F002097	GGTGG	VGTTKLVYWILIGVAICIVVGVTSMAYVETLYMRAQLKQEMKELRKLKRELKEQK
Ga0209296_100039636	F015972	AGGAG	MATKGVVAPRLPLAPVEYDQRFMDALLGILRQYFNALDNPGPVLAATERTTNPTEVISALSCAKPGTTGAPTISLPTQADFANLRSGDIYYDTSGGSASSYPLRIKA