NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1000344

Scaffold Ga0209296_1000344


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39613
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (65.52%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017825Metagenome / Metatranscriptome238Y
F019470Metagenome / Metatranscriptome229Y
F054809Metagenome / Metatranscriptome139N
F061653Metagenome / Metatranscriptome131Y
F069829Metagenome123Y
F070997Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100034413F070997AGGAMSIETGKTYTMRMGYGEEIVAKVTAFDSSTLTLSKPVAVVPGQQGIQLMNSLFTADPEADVTVNRSSVAMIAPVREDVGDSYLEATTGIKPVRSKILMG
Ga0209296_100034420F054809GGAGGMINEWVLIVAFISPGGNFIDKVPVTMPSKTACERAIKTLPKKGEHPMGVQYRGVCVTQAHWTGTEPMKNVPLD
Ga0209296_100034438F017825AGGAGMKNTAVALLFCLISSIAHAQQIVDMQKQIKCSDASSVMSYFSINFQETPLWVGKTTTGTHITLLVNRETRSWTMIEYDASMACVLGAGEISSKPEI
Ga0209296_100034444F069829AGGAMSWFKRSPRRNEPSKPHVYHPPQNTPAAERMLEEAKSTGPDKKNKRAKKL
Ga0209296_100034454F019470AGGAGMEAFVTVREMVEALNRLPPDAQLVVTESGYYSYGELARVGLPEAYTMEGDEDDIPRGTVVYRIGHSHQSY
Ga0209296_100034455F061653AGGAGMRYHFKYRVVTDISSMENAEIDEQGRQILLKTNNYETARKECIQWAAYDDIQVWLLGPHGQKLWDCDGAAEAFGRFPKTAELA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.