Scaffold Ga0209296_1000343

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000343
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39630
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F014714	Metagenome / Metatranscriptome	260	N
F017469	Metagenome / Metatranscriptome	240	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100034355	F014714	AGCAGG	LELKEPELFEYLKEFHYSDLEKSEEFDTWDCVSLEHKMFIELKSRKTHYPELLIEEMKYQALVEAAGIRSLSPWYINATPEGIWGFDLSKLSAPAWADKWLPNTTEFGNRSSRTKLVGFLKVSDGVAL
Ga0209296_100034356	F022400	GGAGG	MVLYQTGRQHKMRRTITRSSQKTTLRLVSGGKEESGSASSPFGPLKVGLITMQKTKEDQVLTELLNSLEREIAELSIKSCEVLNIFLKDTKHLARQKVSFSSTTTTEYDSI
Ga0209296_100034358	F011646	AGAAGG	MSNVIELRNGALKRIIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIWVSEWLTDEEDAREVSPQIEITSIVLSTIANCMERWGN
Ga0209296_100034360	F017469	GAGG	MKSVCQFCGWEITNPEWYNKQYNTSGYVCDNCLTDNAIERERERVSK