NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000323

Scaffold Ga0209296_1000323


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000323 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40642
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (55.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021050Metagenome220Y
F021295Metagenome219N
F047670Metagenome149Y
F051079Metagenome144N
F066722Metagenome126Y
F070998Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100032316F051079AGGAMNEWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVRKAKTELLLQEADILDEILTNATADDVADASTMLRKFQL
Ga0209296_100032328F047670AGGAGMKIRNEYLWLALVVIVIIVSPLLSIWSLNTLFPVLAIPYTFETWLAVMLVGGVFQGLRISKKD
Ga0209296_100032331F021295GAGMHDFEDDPIYNYAKTVMFQLMTVLYMNGRTEAHVGAIMRLLGVDEDRARLHDDERIELDENFARMAAELNMTELVSAQIPQGTTIH
Ga0209296_10003235F066722N/AMEQEIMQAWQVLDDIKMLSARDGTDKADWDAVARLYQIRFETLFETFEQLIKRGAIL
Ga0209296_100032361F021050GGAMIKSWNADQVISQCQQMYFGATDPMVTGWVNWPCKQDLYRVKFAVDEMLAKTSTFSGEAEWLLEQEKDKMWKRLTSR
Ga0209296_10003237F070998AGGAMWAREQSVRYLQQYIQARNETPWVTKMCPDIEDRARETLQYLGGMAGDWYPYRSNCTYYHAQRNVNERKV
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Institute for Fundamental Biomedical Research
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