Scaffold Ga0209296_1000240

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000240
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47558
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (80.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F002653	Metagenome	539	Y
F014143	Metagenome / Metatranscriptome	265	Y
F017452	Metagenome	240	Y
F042804	Metagenome / Metatranscriptome	157	Y
F061792	Metagenome	131	Y
F093270	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100024023	F042804	N/A	MELSRWLTTNGDNCSSEQLAGIWNKLAEWAGVADSAELRAKVLYYYARAREREGK
Ga0209296_100024024	F001538	GGA	MIETIRLFPTVVASGYPDKRDLAQAKLEKQQDVNKTVEVAKQKQTELQDIGFEIYCKKVVQERLRMEIFQNRKLDIYV
Ga0209296_100024047	F002653	AGGAGG	MNDEYPMTDAELHERVQAMSDEEQVHFKLLIHKLVMCYGEGKAQGVVIVGRAEDNIAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0209296_100024049	F017452	GGAGG	MIQTAEDDEFERIEHENQMKSGQPYVFDVYVSSSQRNQVLEEVAREFDKMHALGDTAASFACYVRDMKNAKTKTD
Ga0209296_100024050	F093270	AGGA	MPDLKSALQNAIESWEPTPTNKPVQQPEEKTMSKRPAFEIKNNVTRVTFDYIKLHPGTTAAAASRDLIKHGFKESSVTALMAQFVRAGLATRDNNHGYRVMVDEYIPMKAAHKYTKKPAVKAKPASKAHAHEPQSSGIAALQPEGVGKRIVNTIVFGKTPEEVIKHMTVLQARELYDYLKKIFGG
Ga0209296_100024051	F014143	AGGAG	MNTRYLTHVRQLFATYDAPHSTIRNYQRQWVRGIRRLGDKWLLAKHVQRLETITERNGHA
Ga0209296_100024056	F061792	AGGAG	MAYVCRNYEEALGTFAFRKAVRSSAWQPNERPLDPKPRTEHKLIEGSNSYGKYFDVKLYQTVMARFYEPKVENGKRVERRLYQGHASQTSQQFMRHTLYVDLGVNRQLDSEGLYSDDSVIMPIYTKHFMVDGDNNTPFSLDAVFVDGKLSIPESEHTPHYRMVADTDVRKFKAKVAAHFEPYIMLAQMRMPEFRASCSINYDLGRRFGGEGFNRAYYMAMQELWQTPEPRQQDIDVFFEMCQKAYDIIASKRGTEQPDFQIKGSWYTRNTSTDNTVDDLAKPIEMPEFRRAILDRIHKYVGSNSLKKPEEVKQFPKSSEYPRSNIHT