Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000215 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000215 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51560
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (55.56%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

51560

Total Scaffold Genes

81 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (55.56%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021050	Metagenome	220	Y
F021295	Metagenome	219	N
F050978	Metagenome	144	Y
F051079	Metagenome	144	N
F051887	Metagenome / Metatranscriptome	143	Y
F056555	Metagenome / Metatranscriptome	137	Y
F066722	Metagenome	126	Y
F095379	Metagenome / Metatranscriptome	105	N
F096869	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100021510	F056555	AGGA	MNLKVKAAAIMAGIFAGTIAVQGVLVLAAEKYGPQAIVNAFVGGILVFLIYQMYTLILANLESKEAIKKMTERG
Ga0209296_100021512	F096869	AGGA	MMQDFYFEKTRDSVDDDWPESFSSDDLAKALNVERVSYRIYYSRDNLTCRLFVFRAHCTPAEMDTMLDMGFVFAQDNDTENIPDKPVEEIEE
Ga0209296_100021522	F066722	N/A	MEQEIMQAWQVLDDIKMLSAREGTDKEDWDAVVRLYQIRFETLFETFEQLIKAGTIL
Ga0209296_100021529	F050978	N/A	MDTVNFVRLNCGSQQALALKHQLDLDGLIVNQDYEWRYQKPVYDEFAWTDSEVSNVTFTFRNPALATFYQLKWAR
Ga0209296_100021532	F051079	AGGA	MNEWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLIQEADILDELLTNATADDVADASTMLRKFQL
Ga0209296_100021545	F021295	GAG	MHEFDDDHIYQYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFVKLATELNMNELTSVQIPQGTTIH
Ga0209296_100021550	F095379	N/A	MTKTRHFDSFLTALQPNQISKSGGRTTHCNLIGSSTADWYLVQLNKTSTRDTNRGLSKQALVFERDSRKVSSLTTRIGQAHFSGRELVPNEYAKEARGLSMLISTPNLST
Ga0209296_100021555	F051887	N/A	MTYTYYGVKGDFAWKLAVDNKLRSTNINHVPRLMRESDQVWCQGPRGGVQLIKGDYWNYWATYLRRDSEKMKQFAWVKLQARALKQS
Ga0209296_100021576	F021050	N/A	MIHNWNVNQVISDCQQMYFGATDPMVTGWVNWPCKQDLYRVKFAVDEMLAKTSTFSGEAEWLLEQEKDKMWKRLTSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000215

Overview

Ecosystem & Geography

Associated Families

Sequences