Scaffold Ga0209296_1000214

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000214
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51637
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (87.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012448	Metagenome / Metatranscriptome	280	Y
F027781	Metagenome / Metatranscriptome	193	Y
F042160	Metagenome	158	Y
F073255	Metagenome	120	Y
F080878	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100021415	F080878	AGGAG	MGKVKVQYAPLDFAPEQEQQQEKAVRSMFLLLCNGKPLALYDHRDTADYEMHICIQGDMHEGTENKYRIKTMGVVTHSYEEN
Ga0209296_100021420	F027781	AGGAG	MELHKPDHLISLASSAVLVSVDVNVWSATKQDRVISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKQEYHGHQAAFNTLLGDFILAYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETRTKKRKIYDTTILKAKEMCDTFKGFNLSGDPQLEEARASLERALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0209296_100021429	F042160	AGGAG	MMSRYYLDGFGSEDELNELLASDVLPLVRELQFKYNLKVMGKVMNVGYPQSDKDSYMMCYPNGLAVCKVWTTKVGGANNNQLEFCFRTPHYAKSRGSDQNDRETIRSTKLSSLMAVLKRQEVVRDKKLIMDSKVKQVKLGVSTLRRAMGTSDKQNSFTPDEIHVMLATLLGENTNGLSVPLDLNKCKNTLDIYKEADRIRDIKREESKRFFKNPFYLIGIDDYKHLLIGKFKMTVLHSDTSKMEYEIIEDFKRVRTIEEYPELVPLMTMMKVSYETKECRRLGVLNFPIMDGYDEGLDATFFYGSQPTNYEQAWMATPCPT
Ga0209296_100021448	F012448	GAG	MDIDAISENPNYKPVKLEYVEFAEADDIWVRAYSIPKAKTVISQHVHTHDHITLVSRGTVEAWQDGEWFGEFSAPSMIKISAGKKHAFRALTDDVALCCLHNLRGTGLESPEIKEVNHAV
Ga0209296_100021453	F073255	GGA	MYDQKTDTQTSEESVDGHQRQTDPVGYAHGKHNPVHFRLGNGNQLYAWFVGKGSGQRRNLQDDFTRVFYSYRRHDWVPVWYQTHAE