Scaffold Ga0209296_1000188

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000188
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55025
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (90.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F000952	Metagenome / Metatranscriptome	822	Y
F005903	Metagenome / Metatranscriptome	386	Y
F011374	Metagenome / Metatranscriptome	291	Y
F024264	Metagenome / Metatranscriptome	206	Y
F058000	Metagenome	135	Y
F072099	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100018817	F024264	GGAG	MSTLTNVFAVHEDATGTMYAGATNLAGYQLASGGVAGEIVFRDGGSGGTERLRLNITTNTAVIYTLIPGNGIRFNTDIHVTLPASAAVTIFCG
Ga0209296_100018826	F000952	AGGAG	MSTSDYEQRTILVPQHKRIAMGEKLDGTAMQPKGGSKSSKKPVGGLAHAKKK
Ga0209296_100018838	F072099	GGAG	MQAFSYKRRAPINTMMVLIDFPLVEVGGKRIDHLREDFYDNAVHLRNRRNSTPIVSPYDIALSGGEPYSVWR
Ga0209296_10001884	F000220	N/A	MPEEKLNPNDTLSKVLAYVDSPFKLIAILVMGVVAFAGYFVYSNQEFLIGAYKENRKLPSINEERVEDAAGMLFKQTPATVVAVFKVNPLFGSRVLHRAYTREGRDKSVEGIDVGLFTSNAANNHDVIKLMANETPCGEYLKPQSEVGLWYTAQGVAFTCRTSVPPELSRFVGQITVGFKSEPEDLSGTVSMMEIAATMLTKRSP
Ga0209296_100018847	F058000	AGGAG	MTEVQATIQALATVESLTNNIDTLAVLDRQIKTLTAQTKILKDGIANTLGEGKHRGEKYGVRVTIENRIGSVDVEAVIKALGLTEEEFDKQFRGESSAVIKVTTTA
Ga0209296_10001885	F011374	GAGG	VAVYQDLKKTGNDLTKITSEVGEALSSFFKGQAELETSHEKAEVQREDNRKKGIKDDLATQAIDNVMYLRQTKQFYADLERMVRWEMGMPDLWREIVEEYQRLLDQKSEQAARELHEKRVKAWRRQRLKNQILDKVLETVLVAFVVAYLVCLMWLISLHRRDRLDTYLS
Ga0209296_100018880	F005903	GGA	MITYDPRGMTWEQYCKLMEELFAPQQIGNVPEDLWRNWVDGINGIGFFTQSAIPDHRTYTDWQDWAMAMCGIMVLEG