NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000174

Scaffold Ga0209296_1000174


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000174 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57094
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (71.43%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F003408Metagenome / Metatranscriptome488Y
F003690Metagenome / Metatranscriptome473Y
F009143Metagenome / Metatranscriptome322Y
F015208Metagenome / Metatranscriptome256Y
F017995Metagenome / Metatranscriptome237Y
F040596Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100017414F003408N/AMPEIIQTFKSMHKTEDEKRKFLASLQGVNLNESSVEESNSFEDIKRKALGIQASADDVVSLQGSYADEAGFGIGAGLGYSRV
Ga0209296_100017417F000258GGAGGMTANYKLDAILEIRKFLWSKLVAAEIFDENEYFSDSINDKIVPIIPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQILFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDRVGRFL
Ga0209296_100017459F009143AGGTGGMMTKWDTIQADVSDAYVYLDEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE
Ga0209296_100017460F003690GGAGGMIPNGFELIVSNDYGLELDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK
Ga0209296_100017463F017995GGAMSKMKEYIEIIAAECDECGGAGFIFFGDEKNYDVETCDCVAEVADELTVDWVNN
Ga0209296_100017464F015208N/AMYKITVANDENAIHFAKEYSDELNAHEEFAKFTDWGFADEYSTINLFTPTGKCYTKIFHRNGKVVKR
Ga0209296_100017470F040596AGGMLATAIGILDATKDSIFDDEIMGLAGELHERRNELSDETFAKYLFMYST
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