Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1000174 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 57094 |
Total Scaffold Genes | 70 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (71.43%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F003408 | Metagenome / Metatranscriptome | 488 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F009143 | Metagenome / Metatranscriptome | 322 | Y |
F015208 | Metagenome / Metatranscriptome | 256 | Y |
F017995 | Metagenome / Metatranscriptome | 237 | Y |
F040596 | Metagenome / Metatranscriptome | 161 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100017414 | F003408 | N/A | MPEIIQTFKSMHKTEDEKRKFLASLQGVNLNESSVEESNSFEDIKRKALGIQASADDVVSLQGSYADEAGFGIGAGLGYSRV |
Ga0209296_100017417 | F000258 | GGAGG | MTANYKLDAILEIRKFLWSKLVAAEIFDENEYFSDSINDKIVPIIPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQILFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDRVGRFL |
Ga0209296_100017459 | F009143 | AGGTGG | MMTKWDTIQADVSDAYVYLDEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE |
Ga0209296_100017460 | F003690 | GGAGG | MIPNGFELIVSNDYGLELDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK |
Ga0209296_100017463 | F017995 | GGA | MSKMKEYIEIIAAECDECGGAGFIFFGDEKNYDVETCDCVAEVADELTVDWVNN |
Ga0209296_100017464 | F015208 | N/A | MYKITVANDENAIHFAKEYSDELNAHEEFAKFTDWGFADEYSTINLFTPTGKCYTKIFHRNGKVVKR |
Ga0209296_100017470 | F040596 | AGG | MLATAIGILDATKDSIFDDEIMGLAGELHERRNELSDETFAKYLFMYST |
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