NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000165

Scaffold Ga0209296_1000165


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58593
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (73.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001562Metagenome / Metatranscriptome670Y
F030758Metagenome / Metatranscriptome184Y
F034574Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10001651F001562AGGAGMKSQFEKDLELKESFCQMLDEIYPTYKIGASTFTASEILECCDPIAFSIGLIEHEDYLKETEN
Ga0209296_100016527F030758GGAMATENKNFKVKNGLNVAGNATFDSSVILGETPLRFDTTTNKLQIQLNGTWSPIAFVADIPDTTTEIGFMDIGLAIDYNGLPIYTVQANGVNTTATKFADGGSPSTSTYGLTFDSGVIV
Ga0209296_10001654F034574GAGGMKLTYTIWQGSLMKGRLTAKSMKEIIALVDELNEGNNSLKFEYLLHTIEQESK
Ga0209296_100016548F001229N/AMIDIMEAVLSMKMDIYKQFDIQNPDTGAIVKEWNYYKTLDCHAKGVITNSATTRSGDKQIFSNKYNNEQVIQVRTSERLTTREKITNIRDSNEEAIWTELNYPSDTPTVFEIIGTTPITDPFGQVLAYNSTLKRSENQQIGI
Ga0209296_100016550F000258GGAGMTANFKLDAMLEIRKFLWAELLEAKIFDEDDYYSDNVGSAIVPIIPVQQSPEMNQFLSGKKHIIYDKIGLSYEDNWLVCCEQILFTVYSTDVSEINEIRNFMTDLFRRMDDSAKDLNRFEKLNNKFKFHSIFIADISPTAPSEELKGFLSTDIILEAKYSRITDQSGRFL
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