Scaffold Ga0209296_1000137

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000137
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62841
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (71.54%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F014250	Metagenome / Metatranscriptome	264	Y
F014849	Metagenome / Metatranscriptome	259	Y
F015434	Metagenome / Metatranscriptome	254	Y
F018352	Metagenome / Metatranscriptome	235	Y
F020851	Metagenome / Metatranscriptome	221	Y
F023275	Metagenome / Metatranscriptome	210	Y
F024955	Metagenome	203	Y
F032149	Metagenome	180	Y
F034574	Metagenome / Metatranscriptome	174	Y
F038086	Metagenome	166	N
F045545	Metagenome / Metatranscriptome	152	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000137100	F034574	AGGAG	MKITYTIWQGSLLKGRLTAKSMKEIIALIDELNEGKPTLKFEYLVHEIEQVA
Ga0209296_1000137101	F023275	N/A	MAILDNLEASMADDDGMPRKTVNDVIKEILEDPEHHKLMERLKYMEDHGI
Ga0209296_1000137102	F015434	GGAGG	MESKYPIPPYRHTEKGLSIVDKTTKSTKCCDACECGNSEEQKFNKLMETQSSFEE
Ga0209296_1000137114	F024955	GAGG	MAVENIGNLVPTKIPALADDANIQDALKAYHYGSYDFDTAENNSANLLNPSIAYTINNLQSQITTKAALEVAARDSSRATTTAPTAAAFTAFSNTIPDGYIWVDKDAAAPVGYISATSVYTATQPTTGLANGVIWIKKGSSPLEMYVYNGDTSAFNRVI
Ga0209296_1000137122	F038086	GAG	MAITTISNISNPISIQDIKPTKTLSNIKPFNSTASNVALGAVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPTSVLPFRLTLTNIGIEGYNPANPPGIGIQIIGFSNYIL
Ga0209296_100013724	F006885	N/A	MEYLLVIGLTLLAYWSIIKISNKKRISFLKKIKYRQSDIYEMIKDFIPKQRFEKPKFITQSQKHVQKNMLKVVIEKDKAYWILDNVFYTANAINGRIDEDTAKPLDIENMSTKELDNMLSILDDLKQGVGPDDSGSAGNERV
Ga0209296_100013729	F045545	GAGG	MIKQIALFFICKIKSHNLVDAGSCPFTGKSYNACLRCGATITK
Ga0209296_100013730	F032149	GGAG	MKKKIIIFILSVISVLVTISLFFASRLSQLSDLELFDIEEDDF
Ga0209296_100013731	F010599	AGTAGG	MEMIFLVFFATLSFSFGLSYWATLSKLKKSNLLLAELFIKNRALEELNSQANSGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVRGLDNYSEKLLALLPEIGQEKK
Ga0209296_100013741	F004475	GAGG	MTNWTEELNDKQKEEVWNFVVFTVKEIREQIAKDIEATIPLWKSKGLLKSRKTQKAFEASAAIARGQNEQIDG
Ga0209296_100013749	F054581	AGGA	MCPHCNNKLIPILYGFVDPKYVDMHKEGLVFLVSTTYHTKNSPTAYCKKCEESFNIKVKF
Ga0209296_100013754	F020851	GGA	MSKDLVDLAISMTEIDTGIELSPQEREEMKQRILAKVEDTNQSMI
Ga0209296_100013765	F014250	AGGGGG	MNNMTLAPRLQKLVDLGESGTDILHGELKNLMLEAEEQLTLAQEAEDESGEAMDSMERKYWEGMLDAYSAVYQLTYELAFAISDRTKTNG
Ga0209296_100013786	F018352	GGA	MSKIKNALMDILAHSDCYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFNTKEN
Ga0209296_100013787	F014849	N/A	MILDNGTLLAIIIALAGSITVMCLFWKQNVEQQKEIRRLRNELRKALKV