Scaffold Ga0209296_1000081

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000081
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82437
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (42.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002721	Metagenome / Metatranscriptome	534	Y
F002985	Metagenome / Metatranscriptome	515	Y
F043349	Metagenome	156	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000081104	F000973	AGG	MNYGLRKGLEDIAWELKGIRNILGSMWHSRYQDGETDVLNPEAFADEYISTEECARRLSVSDQTLRNWMAMGRKNPEKGWVEGIHYVNASPDPNRKAIIRVPWNHLIRSFAKNRDLDAQDYRKKTSPMYVSTGFDRLE
Ga0209296_100008111	F001018	AGG	MSQLTEAKLNNLNVLKLYEHYGALERSLPLLTPESQELAKAELETCATLRSEKIDRIHYAMAAHEDAIERIKKEGGLIADAKRHHESQLRSLKGLLSYLRRSLPIESNKITGRNYEFTLIKKKELTVEIQSDPDVWQTEERTNYCIEQEVTTTKQIVLRSMSGEVLEERTEPSIKTTVVPNLDAIRSAYQTGRLLPTGVKVLQEYSIRSKRIYDKRGVELEASEYPGQFLPED
Ga0209296_1000081112	F043349	AGG	MSLTGKFGPKTQAIAIRQVRQWVDKIPAGDSICLRCESTVPDKQFRVWKKWFERHEDFNWEISEEHKSFFFYKKRW
Ga0209296_1000081121	F067649	N/A	MEIRISVGEWMNALQNRMSNAVDGDCFCLPTDMHLHAYMLVKEGSFPDRDFKVEVTK
Ga0209296_100008115	F002333	N/A	MTTQLTTLNAAQACIYTRSNLLRAFQEFDDTDITDISLRDDTCIVVRTDGSEQSYPRETIKTAYQSYTNRLKDFFAYLGPNYRGPSIWHQNAYIMFKGWNYTHSLGHLTSNAKLQSHWIDKFIHLSDPQKVTTLLQSDQTDIGHLVAPDGLRLPTGPIDFSSDSEQESNTGSPAPEPYCSCGSFQRQLANLSDFQMEIKGYKPGCIHLTWFYKYRELLCHRTDVRNKFPGGSPDTCVAWWYAPPSDHISDGRFVLLHTKSGAQAPLSHWRAYKPKEIFTQHNAWDLFSSMLDAGYVPFPGTSLPQLANAVKKQ
Ga0209296_100008120	F002985	N/A	MSYVIACYQDGIPHAISANRQSNAFELVPLDSDTALNKIFSHPYRAGAQQILTWINKNDAALAGNEFEVCDEAKFRK
Ga0209296_100008156	F001806	N/A	MDAGTRQQRVEALETIKNKAMEMAGKGKDSLEVRDFVTSAKKELAYELPDEDAFKKAMNATLAYKAKKGE
Ga0209296_100008159	F002721	N/A	MAKDARLDLGRYIQNPFNRQGQIGKRVDFDDSFRSKPDTGAYPWNPSRFNSEDLLKRGMTRKTTLNPDLNFVGNSPFFDSNEEVTSEYELFEGLGRFDRPVDYDFDEGRARTTQRPQDQPDFNPQWMEAYKISPTVNPSKTAKNPMPRLRNPDPNGYLMALAEKRVENEVEDKPSIAQLLDRKGVMKAEQRNPDDRQSEETADETAINTNTSPGKTQE