Scaffold Ga0209296_1000059

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000059
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99593
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (60.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010226	Metagenome / Metatranscriptome	306	Y
F027175	Metagenome / Metatranscriptome	195	N
F076071	Metagenome	118	Y
F081335	Metagenome	114	Y
F089891	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100005927	F027175	N/A	MTRDQKLERFAERELKRVYTELIIDDEQGGYVAFGRYHVKPQSAGFAVYHNDDLVSTFSSKRTAMSWCVADHLQQYRLAQNIRILDNKKQTLTADIHCRRGQADGSSRPEFREMVHTKLAPKIENLTLLNQELEKCLNSAKYLQLRGFAK
Ga0209296_100005960	F081335	N/A	MLSGEAMPESQWQTFDQYLGVTVYRYDPCVAEFETPPPTDAKFDGVICTQVLNSIPDDDMTWVREKLEYHAEKFCFVGINFQRAAKGKKIIYDSDYFRVPRTREFFRSYYQDWTGSDLFWWFKDRPYYAEWADDQLSGTWHDVPETFVGKYEFVEVNHR
Ga0209296_100005972	F076071	GGA	MPTDTEESFQRLIQNEEYREYFRTKGWLEPDAITYRINSSGFRSEEFDPQATSMVSLGCSYTIGIGLPEQATWSYLVSQALGLKNYNLAWGGTSADTCFMIAEHWLPILQPKLVVMAAPPKHRFDLITEKTDHTHDTYMPSSEIGGADQDGYIKTWFLNDRNADLNNARNRLAVEGLCTRLGIRCLTYNAHDWFAKSREEVEYARDRMHAGPRGHAIFAERIINDFTNTK
Ga0209296_100005974	F089891	N/A	MAGDCTMLVTAVDSEMNLFRVAHAVSKELAAQVLTTDWISLPWQRQEGQENWARRRITDTAIPWIDQWHSELGQQWSTLEQGVGRKLHPYSGTAWWLDEPGFTCGMHTDGEMPGSMHLTWQGPGTAFYWYKDPKTLRYQTPEQPNAGYIMINQADSTGYRPLIWHAMLTPADSYRVTSYTWIHPK
Ga0209296_100005980	F010226	AGG	MAVQVVKDTAGNVLWTTDKAQINSESNNVTYQVQAVQLTYQQANGTPANASMGAGAVGNLYANAVSVPNGTTTEIYVGAGNYLIITGTNFSAVALGTATSATAGSNGI