Scaffold Ga0209296_1000040

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000040
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111976
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (20.99%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F030086	Metagenome	186	N
F047060	Metagenome / Metatranscriptome	150	N
F053294	Metagenome	141	N
F060615	Metagenome	132	N
F066767	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10000401	F047060	N/A	WRKIGDLIQIKEKRSFLFWYLPFFKTVTYQIDFIGLDCSALLKNPKTKESRTITGNVNVL
Ga0209296_1000040119	F030086	N/A	MKNILKDPRFYFFLWIVLSIILAITLGACKQKPLIEKGDVVEKFVIDSMVQLPPHSTIELDRKYKYFMSDSSEFTSLKKYNIGDTITYVYKKQGK
Ga0209296_1000040133	F060615	N/A	MYKIFLQEGKKEDAIQKVKEMFSSPEDAEMINKIFDATSSLGTKFIPFVENETKRYLIDQNTDINDFINLLISRLRSFIKNNAKITSEVIGTTKELWDSIESRAFPKLDVVLNAPKDINSYNIDSLGYLTQALSMISSKREKEREAKKEAERVFEDGDVIGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTRDGKLYYFIDKSNRRQKIALYIKDGDPTVYDAADTGHDVDFLYHVYPEVENFVIEKLLGGGKVKAGFERIKDGTISSWNADRVDPLITSYNRDNEDNVTLNLDFNGRDNDYFDLFEWNEGDGDRMYLDISLSSYGTGDIFDSYYGEEEWKDGYMYSYFDDEQMKRLQTYMKIINPKLYECTLGLKEYGNDDCKIKVSEFLSKTFENAVDNITSEYTYDMNADTERGIKEYLERDYSNMFAEYGLPMTGTFYKKTVKLDDLIKTYQKYNPKFNIGIYGLLRRIINLENIDPPSIADSVYEFRTGNYEYSSTNSAIEKLLDTMEETINENENITGDYVDHYDFIKKLGGFDEWIDMPGDKRYMLKITDLDMEDDRVTFALQNRETRDFKKMRLPFEKFKDFIYNLQLF
Ga0209296_100004016	F066767	N/A	MVNAIENVLNLVVKPKYPSVDEIVVREDNDFDYTTYLIYIISNKYEALNYQNEIVKDIENVCKSMGLKRRDIENITFATKGIDY
Ga0209296_100004021	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPFESKILVIKMFLNTTTDEFTTTDEFTGTGESTPRLSEWEVRGKLWENYNLDTAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN
Ga0209296_100004032	F053294	N/A	MNFFMKLMGDGSDVSSKRFSGIITLINLIGLAYVATIKSGTTPEYMFDTLALLCGGFLGLTTVEAIFAKKKNPEPKKDGE