Scaffold Ga0209296_1000029

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000029
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144478
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (57.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008243	Metagenome / Metatranscriptome	336	Y
F018911	Metagenome / Metatranscriptome	232	Y
F054799	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000029118	F008243	AGGA	MHPLETEIQAINEQCQMGNISAEERNYLLTEIRDIRVAQECAGNEQLFRQLVQACNIAMAVV
Ga0209296_1000029156	F054799	GGA	MKNLLDILPKLLELMPGIVQFLKYIPILMVLAGIGYGAFYWSQNYKDPFKCVDNQIYEQVRVDSNVYEFKGGYCVDGASIK
Ga0209296_1000029187	F018911	N/A	MWECLVTFFSIFFLDIVYTYYLRCVANDNVLGASFWSVACYILGSVAVISYTTNHWLVVPAIAGAFCGTYVGMKIKKRQSKDE