Scaffold Ga0209296_1000019

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000019
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 186609
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (67.02%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010999	Metagenome / Metatranscriptome	296	Y
F021943	Metagenome	216	Y
F027175	Metagenome / Metatranscriptome	195	N
F038992	Metagenome	164	Y
F046897	Metagenome	150	Y
F076071	Metagenome	118	Y
F089891	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000019127	F010999	AGG	MMRPYSEVAAEIAQRNANNYVPPAVPAVKQTPVEIPGVMYQARELFQPIVSKPEGSK
Ga0209296_1000019134	F089891	GAGG	MLVMPIDSENNLFRVEHAVSAELAAQVMATDWMNLPWQRQEGQENWARRRIVDTAIPWIEQWHEEINSQWPVIEQQVGKQLHAYSGTAWWLDEPGFTCSMHTDGEMPGSMHLTWKGPGTAFYWHKDPSTLRYQTPEQPNAGYIMINQADSTGYRPLLWHAMLSPSDSYRVTSYTWIAPQ
Ga0209296_1000019135	F076071	AGGA	MKKNKTLWHFGTKRAGETLKWMPTDTEESFQRLIQNEEYREYFCSKGWLDPDAITYRINSSGFRSEEFDPRADSLVSLGCSYTIGIGLPEQATWPCLVSQALGLKNYNLAWGGTSADTCFMIADHWLPILRPKLVVMAAPPKHRFDLITEKVDHYHDTYLPGSEIGQADQDGFVKTWFLNDRNADLNNARNRLAVEGLCNKLGIHCLTYNAHDWFAKSRDEVEYARDRMHAGPLGHKKFAERIINDFATK
Ga0209296_1000019140	F021943	N/A	MRTALDTELFPELCEVVEIPPHNQWVYLIQKNGSSSLRVQQKRDNLAVFANEKIHGLDYIDVYIRNPRSRYVSGINTYIQLLLTDHPELDYNTAFWFARRYKFLNTHYLPQFHWLANLSQYLHSNAKIRFRNFQDLRQITDLNLGPTGVTSATAEFVKTLFKNDANIELWLFLDQILLDLAGQELTWSQLLEHYHHNHPEIIKHVLPKT
Ga0209296_1000019188	F027175	N/A	MTRDQKLERFAERELKRVYTELIIDDEHGGYVAFGRYHVKPQSTGFAVYYHSDDLVSTFSSKKTAMSWCVADHLQQYKLAQNIRILDNRKQTLTADIYCRRGQADRSTKPEFREMVRTKLAPKIENLTLLDQELEKCLNSAKYLQLRGFAK
Ga0209296_1000019190	F046897	GAG	MRIDEVENTKPLDPAKLQGLVDFLSGRADDENAQKQISTDAFISAARSLGFPVSEKNIVSIVSQPPLDSVLEPMDSQNPTVIKYKGAAPNVAPKMPVNKAQDIVAASAKSAMQRGMNK
Ga0209296_100001932	F038992	GAG	MNTIEQIINRIKRLEQFVVRVPVPPTFQFTGSVPFDIEIVGSTAMVTVWAANEAEAQRRAEEFFQNTP