NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000004

Scaffold Ga0209296_1000004


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)356865
Total Scaffold Genes458 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)292 (63.76%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F011825Metagenome286Y
F021237Metagenome / Metatranscriptome219Y
F059640Metagenome / Metatranscriptome133Y
F081327Metagenome / Metatranscriptome114Y
F094831Metagenome105Y
F098647Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_1000004121F011825N/AMEQSKKPVEQYYYSKDEWDRLGCGPLPPERDRAKKLEDVMSRGNPKTDGKVVKGYN
Ga0209296_1000004146F098647AGGAMFNFKSVVDQVATASKQPLTFVEDKAIRANLETLVDSYAGFTKTVYDTNLELAKQVVESTKSVDFTKAFEKFTATK
Ga0209296_1000004156F021237AGGAGMRYYDYEWDLEPNRILLDAELNVDALGWRGGDYFKVINHNGRVMLVKVDPLEKFLRDGVGDEKI
Ga0209296_1000004194F059640GGAGMNSIYNYLGYEYRPWDDVEPDNIKTFHECYKNGQRVKMPEAFYCHSPYDTMTFEQFVGHVQTVEVFVQG
Ga0209296_1000004195F094831GAGGMPYVPQELRTQSFIAGFNDVYMTVQANPEMRMIPISQLETVRRGLRQLGYRFRIVYRGPHRRNRSTLKHNARAFNVYFGDY
Ga0209296_100000424F081327AGGMFPFGDWIYATWDYIKKDYHEWPLRFCAEVFSWACSVVSAIIFAVSVPEIPVIPLYSIFIAGCAAAAWTCWTRGSFGLLANYAFLIFIDAIGLIRFIIKTT
Ga0209296_100000464F001443GGAMPMYETTVRTPEGEKKDRVWARDLAEARMLLEQRHGPRNVPYIPHIIPS
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