Scaffold Ga0209444_10135145

Overview

Basic Information

• Taxon OID: 3300027756
• Scaffold ID: Ga0209444_10135145
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 962
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F051912	Metagenome / Metatranscriptome	143	N
F079619	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209444_101351451	F079619	N/A	YHATIRTKSNNIMEEINIQEWDNLQPDPISDKTKVELALIDLYNRLAMQIPTNHQEILDELAQRLLPQEASLTVKQVAGSLDASISDEIEIQKLRVEANSPYNDGWTKQFYDKELQKVTEKRDQDYMYNWIRSKSGK
Ga0209444_101351452	F031482	N/A	MTNRYQKSPLSLIDGGSKIRITFKNGVEKEYDNIKDVSAYVAKVLSESDYMINRIEMEKEVVTTTKEWCPLFGRSRYGTYGSESHSYNAEI
Ga0209444_101351453	F051912	N/A	MTEKEKAESLVDEFYQYTNTNSRENAKACARILAKEVIVKLKYNKVMSVIVEYWEDVLIEIDRIPA