Scaffold Ga0209444_10055883

Overview

Basic Information

• Taxon OID: 3300027756
• Scaffold ID: Ga0209444_10055883
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1759
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209444_100558831	F019614	N/A	MLEVSTWRVYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKLLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVN
Ga0209444_100558832	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRNENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRGIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV
Ga0209444_100558833	F015582	N/A	MNTNINPELQAEQLEDAKYLEELNHYVNTLATPSAEAVALYSAKLSNLEDIHTEIRAKYPNFMPIYDTSTDSECNHDLGKYQEMSYSISQRDMRRE