Scaffold Ga0209444_10006199

Overview

Basic Information

• Taxon OID: 3300027756
• Scaffold ID: Ga0209444_10006199
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6283
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F060634	Metagenome	132	N
F088345	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209444_1000619915	F060634	N/A	MMDFIVGIFAVIVFLAFYLYIGYWFLDLKTLPAEHWVSRSANHVRSFFGDIWAPMRWKTRRLDIRLLLVIDNLVMRLTNIDFVLLSKRLWTGVILFISKLKKLFFERNEDKR
Ga0209444_1000619920	F088345	N/A	IMYRKYYRVKKMDELEKFFLPPDIQSWIMRYDAGSEQALVKQVPLTEDNITMIDRLAGMMLITRRYRGPRHNSRNFTRDCPKKDAERVSVYLRERVA
Ga0209444_100061994	F016365	AGAAGG	MNDLIKITLAIGAIVYGMTAPLPANEAVKETQDAINKWYETASTSISQDFTALGVTVSNMPEKISLGVSNFVDETVAYQKESWAKTLTFEQEKQNWATIKGWFTPATEGEKK