Scaffold Ga0209034_10043064

Overview

Basic Information

• Taxon OID: 3300027755
• Scaffold ID: Ga0209034_10043064
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1611
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9983
  • Long. (^o): -44.9998
  • Depth (m): 220

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002006	Metagenome / Metatranscriptome	605	Y
F005685	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209034_100430642	F005685	GAGG	MKRFNEYTSFEDKILATLKKRPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQIKRTKK
Ga0209034_100430643	F000245	AGGA	MKTFKQFDEGSLDDKMDKAVSDEIKKRKLARHPVNATDDYKMKTKKNLAFKFPTPSGEMMFHVYLRKMLPSKGQPKGVRAFNYQLEDK
Ga0209034_100430644	F002006	AGG	MPEDSQDVKLQVGLLQQEVEVRGRQIDALLTKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLDERVRAVEQYKSKLAGIIIAVGGAVGIAVASIMGLLNVFKD