Scaffold Ga0209034_10013716

Overview

Basic Information

• Taxon OID: 3300027755
• Scaffold ID: Ga0209034_10013716
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3315
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9983
  • Long. (^o): -44.9998
  • Depth (m): 220

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022974	Metagenome / Metatranscriptome	212	Y
F039176	Metagenome	164	Y
F062153	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209034_100137164	F062153	GGAGG	MRIVLNGKVAKNVTVTKHEGKYIGYSLRNNSGKKWSLVRNRKDDRYLGVVNHGSMYNHKFRGYEWLSDETGDLVGVC
Ga0209034_100137165	F039176	GAG	MIVDRESEFGGIDLSLNRSLEELISSYFEAHGAGIELDEDTRPEELDAYYTLENYLHDMEAI
Ga0209034_100137167	F022974	AGG	MENNETYYIARLTKKGKFLSSEIFETLESARLWAMKETKLLVSDTFLRKCKADDVVVEIDKYFLAYELDSEELFKNGMRVA