Scaffold Ga0209596_1302827

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1302827
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 634
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003965	Metagenome / Metatranscriptome	459	Y
F013527	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_13028271	F001562	GGAG	MKSQLEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAIGLVE
Ga0209596_13028272	F013527	GGAG	MNVYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADIRDLELSE
Ga0209596_13028273	F003965	N/A	LNTMCREHNPMKSAISNVGDEQYTFCQDCEQNIERWYDDTDPERLPMWTDWKVSK