Scaffold Ga0209596_1078660

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1078660
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1615
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F019476	Metagenome / Metatranscriptome	229	N
F024047	Metagenome / Metatranscriptome	207	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10786603	F009135	N/A	MSKPKYYLKVNLPTTFDDLDAEVIKKDLITYINSRNQYGALYGPKSSKKGIVVEKIIYSTNED
Ga0209596_10786604	F024047	GGA	MANVQTKDIIEWVKNAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNDYGDLQIVRFLII
Ga0209596_10786605	F019476	N/A	MNETKTKTARIILDIEWESDDDSDLPSLWDWKRIKMSMNLTKVKYLGIHTQSGPENVSNWMGN