Scaffold Ga0209596_1056529

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1056529
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F007469	Metagenome / Metatranscriptome	350	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10565291	F004599	GGAG	MAFNLADYEDVATLNKWLISNYPNFRSDISVISADPDKGYILVQATLWRDSNDPSPAVSNIAFGSRDTYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVDDAPIKNIYGKSGNSQLIEMALRKSFADDAKPTSEPTTWSVGDVAEALSTKPKQQECTHGLMILKEGTAKTGKPYFGYVCSAPKGEQCDAKWAVTAANGSWFFREED
Ga0209596_10565292	F007469	AGGAGG	MGEMTMIDGSGLTATFTDSGVRVEPSTIVCDTCNDDRLLHEGDLLRCYSCHSINRIP
Ga0209596_10565293	F002162	GGA	VPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELSRVYSAIPAIFKGTGWASKDG
Ga0209596_10565294	F042333	GAG	MDGYSTADGFRVFQCLKCCAVGTKNLAEATDTQEPVIRCEQCGSWQFVDQQCHTCELIGA