Scaffold Ga0209596_1055027

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1055027
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2056
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10550271	F105192	N/A	MDISTTQIIITLIAAAISGAFTAQINNIRAKKERLARAEDKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLTHIGMHSDED
Ga0209596_10550272	F072349	AGGAGG	MDRVLCYCCNKSKNELATKKSALLPINLLLCKSCTDNKLEPRWIIILAGRQYGPEHVKEHIAKKKYTGSDITASELLI
Ga0209596_10550273	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIRELKKPTPTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGRNHG