Scaffold Ga0209596_1048409

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1048409
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2236
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F012669	Metagenome / Metatranscriptome	278	Y
F089877	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10484091	F089877	N/A	MKIKLDNLDTDNFMSHEYILNGEVVTLIQPKNIGVKWTQDNKHMRSVVVNYEGEVISASFPKFTNWGENPEHFPVPNSLNHCTVVEKLDGSTLIVSKYNGQYILRTRGTVDASTMANGFE
Ga0209596_10484093	F012669	N/A	MSEQTYINLKDAVKRPKFDLKNINRENKQFKRLVDNYQKWNEDEDVNEPRSTYEDDIIECLGHYDLDGYQLAEYLHDYKYVEPNTELVDILDDALFVKSSLEREIFTQWVKENFLTIPEDVVGKKVNAKQNLRKYENHYITGIRPETYQVTVSENATKQGGWIVGFENVTFL
Ga0209596_10484094	F000962	GGA	MNIHVPEEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVA