NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1042002

Scaffold Ga0209596_1042002


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1042002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2465
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014137Metagenome / Metatranscriptome265Y
F022884Metagenome / Metatranscriptome212Y
F042325Metagenome158Y
F049619Metagenome / Metatranscriptome146Y
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10420022F049619N/AMLTIKNLNKLNQKTLGKKNFYVARIEEQVSYDNISLTASEHQYRFELSNRKYAITVTLDRSNPKLFVVPHYKLTSSTGKILFITGKQISNMDIFIDKLRFVALG
Ga0209596_10420023F042325N/AMLKIGNIQKIEGTKIETVHAYWVVMSIEELKYDYNIKVRFDYGKSFGVKHPKYIKFKILRYNEFDSTANEWRMYNDQNSNCVTLTKGLLDFKMFPGMLGGQLDSFSK
Ga0209596_10420024F014137N/AMLTIKNIQTIIGETYNEVFNVIGVKEEKSYYEFTLGYATVGKPNYETILLHRKQTDNGMYVMEYNNKTLWLNTNEFDTIDKIIICMQTI
Ga0209596_10420025F103248N/AMLTIQNIDKIINITSPLPYKWYISAVDELPDDLYGFSVYINGKIENVFYLNRESRYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYFIKQAIDKMLNE
Ga0209596_10420026F022884N/AMLTINNLDKIVRYPIGYTFRVRCMILGHTNYHIALIDGKGQHRDLKLNRMKGRRDKYTLSHGNHFLYLKFSDIQNIDTFCAQLKRLIC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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