NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1037637

Scaffold Ga0209596_1037637


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1037637 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2651
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F007468Metagenome / Metatranscriptome350Y
F050377Metagenome / Metatranscriptome145Y
F085700Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10376371F085700AGGCGGMAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNALRFKQDWDTGYTSEGLLLADALNDMLVSKYGAVERTPIIKSLEEKRHRDSKYIMDLDSF
Ga0209596_103763710F000868N/AQMVIDAIYSDIGEMLVEDWANSNLDEGQLYADFRFAEMSDSNYIKGRFNLFYDLNVGDQYYLECEEE
Ga0209596_10376372F050377AGGAMSTPTTTREYLKTQGITVGKRGRFSAAALGAISKAVQEGVVFSDTKNAK
Ga0209596_10376374F000441AGGAGGMKITDKYLNEQLDIAQKLLWGGSETENIEAHNIISKLIYDRIEQVNP
Ga0209596_10376376F000263AGGMDMTMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGHLDALVLLYELTYQLSFAIGARTL
Ga0209596_10376377F007468GGAGGLTKSSKFIEYMKIHLISLNQDLEMNPESINVIDISGQIYATEHLLSVATDIMNDNERVY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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