NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1027291

Scaffold Ga0209596_1027291


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1027291 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3291
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043388Metagenome156N
F067726Metagenome125Y
F103251Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10272912F043388AGGMAISTAPIIYDDTITYNEAGVVYDQSAYTDFLNDAFDDLVTILQGITGLRVVDDPRNIAPPCAFVDAPTIESFNYNIVKMNFPVTLISTGPGNLDALRQLLNLTAALITKNIAVMSAQPKVVTVGGQEFAGYEVIIPLQAQNG
Ga0209596_10272913F067726GGAMDRYVITSSRVGEIGTAFVAQPSDDIVWLLAGGFIQRSDTHPSKGAKLAMKPDEPKSTKG
Ga0209596_10272916F103251AGGAGVSLEIQGLESTLKALQKIQPEVKKQFFKDAKKIVKPAVDEAKNAYRTDYLSGMSRAWKPKDRPQVFPWDQVAASKGVAVSTSLSKKRDAVLTIIQKDIGASIVDMAGKKSDKRGFGSHLTAKALAPSRVMWRSYEHHAGNIEAEMQLSVDQVMKRISAIEKMVIL

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