Scaffold Ga0209596_1025132

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1025132
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3476
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F032573	Metagenome	179	Y
F043751	Metagenome	155	Y
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10251322	F057197	GAGG	MANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKAAINAYRDLLRRDTLGFLKASHPAEAEKTGE
Ga0209596_10251324	F019099	N/A	MIINGKIVKDWDKRQISTGYQKPNQFRQITWDMGRIQSWLLGEKRLTRNLIEKVIR
Ga0209596_10251327	F043751	AGGA	MKHCWPKKMYYVMCRWIAIKNGSRNYVRTPSLGRARYYSKKLKLKVRQIDVRVRGQKAYVLKGSWL
Ga0209596_10251328	F032573	AGG	MSKAEAWRKWWSVIHKTAPAGSYDPREAPMWDAWEAAWDESTKQSQVEITHLKEQLLRANTNDGAYKAAFLAGQMAARGGSWK