NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1022694

Scaffold Ga0209596_1022694


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1022694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3712
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F031497Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10226941F031497AGGCGGMSKTPEIKVAESLVNLMDDHWFNSTIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMIHVYSNQGSTSEGLLLANELNECIKAYQESNQLVNLKLPSRSYKVKREEPRVHTFGWNEEEDPF
Ga0209596_10226943F000441AGGAMRMSDNYLNDQLNKAQELLWGGSETENIEAHNIIAKLISDRIVQVKNS
Ga0209596_10226945F000263AGGMDMTMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGHLDALVLLYELTYQLSFAIGARDEA
Ga0209596_10226949F000868AGGCGGMSSFLENENEMVIDMTYSEIGEMLVEDWINSNLDEGQLYADWCVANMASSNYLKGRFNQFYDLTPTDNYYLEWNEAE

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