Scaffold Ga0209596_1022694

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1022694
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3712
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10226941	F031497	AGGCGG	MSKTPEIKVAESLVNLMDDHWFNSTIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMIHVYSNQGSTSEGLLLANELNECIKAYQESNQLVNLKLPSRSYKVKREEPRVHTFGWNEEEDPF
Ga0209596_10226943	F000441	AGGA	MRMSDNYLNDQLNKAQELLWGGSETENIEAHNIIAKLISDRIVQVKNS
Ga0209596_10226945	F000263	AGG	MDMTMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGHLDALVLLYELTYQLSFAIGARDEA
Ga0209596_10226949	F000868	AGGCGG	MSSFLENENEMVIDMTYSEIGEMLVEDWINSNLDEGQLYADWCVANMASSNYLKGRFNQFYDLTPTDNYYLEWNEAE