Scaffold Ga0209596_1021788

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1021788
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3817
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10217882	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLVHYNFWEWKASNDESNYNFYHEL
Ga0209596_10217883	F034772	N/A	MKNLIDYFTPTTEEHKLFLRHFLSTLTVFIVLGGMFYCLMYLKAL
Ga0209596_10217884	F009004	N/A	MKNFNQVLDFLELQQKEDKLNTNQLHLIIQTLVTFLDDEQMQEVENLFNQFKK
Ga0209596_10217889	F007860	GGGGG	MKSNYLASLYFIAGFLTSFSLMFQGTEPYINLAGVTLFLYLTFSLTEAFEEL